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cDNA libraries
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cDNA library details
This table displays detailed information about the cDNA library
GPN
.
Properties
Library property
Value
Author
Angelika Felk, Heike Nierig, Sophia Biemelt, Uwe Sonnewald, Wilhelm Schaefer
Cultivar
Pasadena (susceptible cultivar)
Description
Each second spikelet of barley was infected with Fusarium graminearum (strain FG2311, isolated from wheat, 1992, Hohenheim, Germany) by means of micropipette using 5 µl of conidia suspension (500 conidia /µl). The infected plants were incubated 4d by 16 h light and 20°C and infected spikes were incubated the first 48 h by 100% rel. humidity for establishing of infection. PolyA-RNA was isolated from barley spikelets and used to create a cDNA-library by means of the "SMART cDNA library construction Kit" (CLONTECH). Normalisation was performed essentially as described by Ko (1990, Nucl. Acid Res. 16, 9877) with some modification of Kohchi et al. (1995, Plant J. 8, 771-776). Normalised cDNAs were digested with NotI and cloned into NotI digested pCRblunt vector. (GABI-Agrotech Project)
Entry date
01-FEB-2004
Laboratory
MPP, MEP, IPK; Institut für Allgemeine Botanik, Uni Hamburg
Laboratory host
E. coli XL1-blue
Number of plates
0
Plate size
384
Restriction site I
NotI (GCGGCCGC)
Restriction site II
NotI (GCGGCCGC)
Tissue
with Fusarium graminearum infected spikelets
Vector
pCR-blunt (Invitrogen)
cDNA LIBRARY ID
GPN
Features
Value
Statistic
1,503
Number of ESTs
1,503
Number of clones
107
Minimum EST length
700
Maximum EST length
495
Average EST length
1,503
3´ ESTs
0
5´ ESTs
Clones/EST ratio
EST direction ratio
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